Performance Analytics for Computational Experiments (PACE)
Understanding computational performance of a complex coupled model like the Energy Exascale Earth System Model (E3SM) poses a singular challenge to domain and computational scientists. Toward that goal, we developed PACE (Performance Analytics for Computational Experiments) , a web-enabled framework to summarize performance data collected from E3SM experiments to derive insights and present them through a web portal.
The primary goal of PACE is to serve as a central hub of performance data to provide an executive summary of E3SM experiment performance.
To learn more please visit here
Note
This project is under active development.
Contents
PACE Web Portal
To navigate to the portal go to Performance Analytics for Computational Experiments (PACE). 10 most recent experiments are displayed by defauly on the home screen. To view more experiments, click on More Exps button at bottom of the list.
There is a high level navigation menu based on specific platforms, benchmarks, simulations etc. at the top of the page. Navigating through this will load up the 10 most recent experiments meeting the respective criteria. To view more, click on the More Exps button at bottom of the list.
An user can also search for desired set of experiments using the search functionality. The portal offers a free form search with auto complete capability. The experiments can be sorted by available options in the dropbox menu in either ascending and descending order.
Advanced search capability is also available. For example looking for specific user and machine combination, we can do:
user:gaurab machine:summit
More than one search can also be performed at a time by using pipe (|) for search queries. For example looking for experiments by 2 different users, we can do:
user:gaurab | user:sarat
If you are looking for a exact match prepend ‘$’ keyword to your search query. More details about advanced search can be found here .
Another capability available is a summary scatter plot. Click on the ‘Scatter Plot’ button on top right. This will display a scatter graph of 50 most recent experiments matching the search criteria. The summary can be displayed for Machine, User, Compset and Res. To view for specific experiments, click on labels on top of graph which will hide/show that data point. Use labels to filter further down to your interest.
Single Experiment
To view the specific experiment, click anywhere on the experiment row. This will open up the details page for that experiment.
More details on Single experiments
Experiment details
The experiment details page displays all the metadata of the experiment. In Left section, it displays all the available graph of option for the current experiments. To download experiment click on Download Raw Data.
To add notes to this experiment, click on Add/Edit button which will open up a new tab where you can add notes and save it.
More details on graphs
Summary Graph
Tree Graph
Flame Graph
Model Component Graphs
Scorpio IO stats
Memory Usage Profile
A recent version of E3SM master includes an improvement in our memory usage profiling. This page shows how to use it to check for possible memory leaks and out-of-memory type of issues.
Memory usage is captured at a node-level for each of 9 ROOTPE component nodes (CPL, ATM, LND, ICE, OCN, GLC, ROF, WAV, IAC) once-a-day Memory usage is represented by a pair of “highwater” and “usage” numbers. The highwater number represents a total memory footprint of a process including data paged out to disk (virtual memory) and the usage number represents memory actually residing in RAM (resident set size). Per-task memory snapshots are summed up across all tasks on a node to derive on-node memory highwater and memory usage in megabytes.
Both Resident and Virtual memory profiling graph is displayed. Click on labels to filter the PE component for your desire view.
Resident Memory Profile (RSS) graph
Virtual Memory Profile (VSZ) graph
Model Component
In Model Component section, it displays the runtime table and PE layout of the model components.
Model Input Files
In this sections, all the model input files are stored and can be viewed in detail by clicking on it. Following Input file are available XML Inputs, Namelist Inputs, and RC Inputs.
Multiple Experiments
To compare multiple experiments, check boxes for your desired experiments and available graph options will light up green. This will allow for multiple experiments to be viewed simultaneously in their respective graphs.
More details on Multiple experiments
Compare Multiple Experiments
After checking the box for your desired experiments. Available graphs are flame, tree and atmosphere component. Available graphs buttons will light up green.
Flame graph
Looking at how time is distributed on various application ridges. Flame graph helps to view the row of various processes time distribution. The time process can be navigeted further deeper by clicking on the process time bar in flame graph.
Tree graph
Tree graph shows the time distributed for each componenent of process time as a bar chart.
Atmosphere componenet graph
This graph shows the time distribution of the atmosphere component process. Following process time are displayed in the graph To view for specific experiments, click on labels on top of graph which will hide/show that data point. Use labels to filter further down to your interest.
Label |
Timer(s) |
|---|---|
Convention |
‘a:moist_convection’ |
CLUBB |
‘a:macrop_tend’ |
Aerosol |
‘a:microp_aero_run’ + ‘a:tphysbc_aerosols’ |
Microphys |
‘a:microp_tend’ |
Radiation |
‘a:radiation’ |
Phys aft surface |
‘a:phys_runs2’ |
Dynamics |
‘a:stepon_run3’ |
Phys/Dyn Coupling |
‘a:stepon_run1’ + ‘a:stepon_run2’ |
Hist |
‘a:wshist’ |
ATM Other |
‘CPL:ATM_RUN’ - sun (all above timers) |
Getting-Started-Upload
Note
The experiments executed on all E3SM supported supercomputers are automatically uploaded to PACE nightly.
These instructions are applicable for manually uploading experiment data. First, download the pace upload client and run the client to upload experiments to PACE.
Tool
Please download and use this tool: Python 3 version or Python 2 version to upload experiment data directly from supercomputers.
To download using command line:
Python 2 version
$ wget https://pace.ornl.gov/static/tools/pace-upload
$ chmod +x ./pace-upload
Python 3 version
$ wget https://pace.ornl.gov/static/tools/pace-upload3
$ chmod +x ./pace-upload3
This is a Python-based tool that can be executed directly (./pace-upload) once you download and make it executable. The system-wide Python 2.x installation on Summit/Theta/Cori/Compy has the requisite ‘requests’ module to enable this tool to work. It presently handles uploading user data in performance archive directories from all E3SM supported machines. The server checks for duplicates while processing uploaded data.
Please see the demo for reference. A log file is written at the end that details the upload progress and notes any errors.
Usage
Example:
$ ./pace-upload --perf-archive user-exps-set
Detailed usage:
$ ./pace-upload --help
usage: pace-upload [-h] [--exp-dir SOURCE] [--perf-archive SOURCE]
[--application {e3sm}]
PACE upload tool.
optional arguments:
-h, --help show this help message and exit
--exp-dir SOURCE, -ed SOURCE
Root directory containing experiment(s) results.
Handles multiple experiment directories under root
--perf-archive SOURCE, -pa SOURCE
Root directory containing performance archive. Handles
multiple performance archive directories under root
--application {e3sm}, -a {e3sm}
Application name
Developer Guide
Architecture
Performance data from simulations executed on supported supercomputers is automatically uploaded to PACE. PACE processes and ingests that information into the backend database. Finally, an user can interactively explore the performance data through the web portal.
APIs
Endpoints
API list
- /ajax/getDistinct/<entry>
Get a specific list of elements from e3smexp
Example request:
$ curl https://pace.ornl.gov/ajax/getDistinct/<entry>
Example response:
[ 'summit', 'cori', 'compy' ]- Query parameters
entry(string): value from the list['machine,'user']
Note
note
- /ajax/similarDistinct/<keyword>
This is designed for the search bar on the website. It predicts what a user may be looking for based on where the dev specifies to search.
Example request:
$ curl /ajax/similarDistinct/<keyword>
Example response:
predicts what a user may be looking for
- Query parameters
keyword(string):user search query
Note
note
- /ajax/search/<searchTerms>/<int:mlimit>/<orderBy>/<ascDsc>
This is a rest-like API that gives information about queried experiments from the e3smexp table.
Example request:
$ curl /ajax/search/<searchTerms>/<int:mlimit>/<orderBy>/<ascDsc>
Example response:
list of experiments
- Query parameters
<searchTerms>(string): string value<mlimit>(int): integer limit value<orderBy>(string): value from the list["expid","total_pes_active","run_length","model_throughput","mpi_tasks_per_node","init_time","run_time","user","machine","compset","exp_date","res","e3smexp.case","case_group","lid"]<ascDsc>(string): value from the list['desc','asc']
Note
note
- /ajax/specificSearch/<query>/<whitelist>
This function is used by the scatter plot and sends requests of the form
https://pace.ornl.gov/ajax/specificSearch/*/expid,machine,model_throughput,total_pes_activeExample request:
$ curl https://pace.ornl.gov/ajax/specificSearch/*/expid,machine,model_throughput,total_pes_active
Example response:
returns scatter plot data
- Query parameters
query (string): string valuewhitelist (string): value from the list[expid,machine,model_throughput,total_pes_active]
Note
note
- /atmos/<expids>/
Atmosphere model component stats page and also compare multiple experiments on atm
Example request:
$ curl https://pace.ornl.gov/atmos/<expids>/
Example response:
{ "ATM Other":{ "label":"ATM Other", "name":"ATM Other", "time":29.466, "time_percentage":0.06 }, "a:crm_physics_tend":{ "label":"MMF", "name":"a:crm_physics_tend", "time":0, "time_percentage":0 }, "a:macrop_tend":{ "label":"Macrophys", "name":"a:macrop_tend", "time":6562.556, "time_percentage":12.83 }, "a:microp_tend":{ "label":"Microphys", "name":"a:microp_tend", "time":6033.725, "time_percentage":11.8 }, "a:moist_convection":{ "label":"Convection", "name":"a:moist_convection", "time":1044.003, "time_percentage":2.04 }, "a:phys_run2":{ "label":"Phys Aft Surface", "name":"a:phys_run2", "time":5313.299, "time_percentage":10.39 }, "a:radiation":{ "label":"Radiation", "name":"a:radiation", "time":5968.201, "time_percentage":11.67 }, "a:stepon_run1":{ "label":"Phys/Dyn Coupling", "name":"a:stepon_run1", "time":4874.382, "time_percentage":9.53 }, "a:stepon_run3":{ "label":"Dynamics", "name":"a:stepon_run3", "time":10728.853, "time_percentage":20.97 }, "a:tphysbc_aerosols":{ "label":"Aerosol", "name":"a:tphysbc_aerosols", "time":9559.003999999999, "time_percentage":18.69 }, "a:wshist":{ "label":"Hist", "name":"a:wshist", "time":1038.471, "time_percentage":2.03 } }
{ "Dyn":{ "time":[ 0, 0, 0, 0 ], "time_percentage":[ 0, 0, 0, 0 ] }, "SHOC":{ "time":[ 0, 0, 0, 0 ], "time_percentage":[ 0, 0, 0, 0 ] }, "SPA":{ "time":[ 0, 0, 0, 0 ], "time_percentage":[ 0, 0, 0, 0 ] }, "P3":{ "time":[ 0, 0, 0, 0 ], "time_percentage":[ 0, 0, 0, 0 ] }, "RRTMGPxx":{ "time":[ 0, 0, 0, 0 ], "time_percentage":[ 0, 0, 0, 0 ] }, "ATM Other":{ "time":[ 38.675, 0, 0, 579.208 ], "time_percentage":[ 3.92, 0.0, 0.0, 100.0 ] }, "Convection":{ "time":[ 0, 224.679, 0, 0 ], "time_percentage":[ 0, 2.06, 0.0, 0.0 ] }, "CLUBB":{ "time":[ 108.379, 1882.563, 0, 0 ], "time_percentage":[ 10.99, 17.29, 0.0, 0.0 ] }, "Aerosol":{ "time":[ 81.688, 997.623, 0, 0 ], "time_percentage":[ 8.28, 9.16, 0.0, 0.0 ] }, "Microphys":{ "time":[ 269.573, 695.908, 0, 0 ], "time_percentage":[ 27.33, 6.39, 0.0, 0.0 ] }, "Radiation":{ "time":[ 449.087, 519.194, 0, 0 ], "time_percentage":[ 45.52, 4.77, 0.0, 0.0 ] }, "Phys Aft Surface":{ "time":[ 0, 2111.118, 0, 0 ], "time_percentage":[ 0, 19.39, 0.0, 0.0 ] }, "Dynamics":{ "time":[ 39.086, 2443.905, 0, 0 ], "time_percentage":[ 3.96, 22.44, 0.0, 0.0 ] }, "Phys/Dyn Coupling":{ "time":[ 0, 1767.0120000000002, 0, 0 ], "time_percentage":[ 0, 16.23, 0.0, 0.0 ] }, "Hist":{ "time":[ 0, 246.688, 0, 0 ], "time_percentage":[ 0, 2.27, 0.0, 0.0 ] } }
- Query parameters
<expids>: list of integer
Note
note
- /benchmarks/<keyword>
get list of benchmarks
Example request:
$ curl https://pace.ornl.gov/benchmarks/<keyword>
Example response:
[ 'High-res Atmosphere', 'High-res Ocean' ]- Query parameters
keyword(string): value in the list of["FC5AV1C-H01A", "GMPAS-IAF"]
Note
note
- /buildtime/<int:mexpid>
This api is to get the build time stats page
Example request:
$ curl https://pace.ornl.gov/buildtime/<int:mexpid>
Example response:
[ { "name":"CMakeFiles/rof.dir/__/__/mosart/src/cpl/rof_comp_esmf.F90.o", "time":0.172597 }, { "name":"CMakeFiles/wav.dir/__/__/stub_comps/swav/src/wav_comp_mct.F90.o", "time":0.284152 }, { "name":"CMakeFiles/glc.dir/__/__/stub_comps/sglc/src/glc_comp_mct.F90.o", "time":0.294248 }, { "name":"CMakeFiles/rof.dir/__/__/mosart/src/riverroute/RtmSpmd.F90.o", "time":0.177503 }, { "name":"libwav.a", "time":0.032712 } ]
- Query parameters
mexpid (int): experiment id value
Note
note
- /e3smrunsh/<int:mexpid>
e3sm_run sh script page
Example request:
$ curl https://pace.ornl.gov/e3smrunsh/<int:mexpid>
Example response:
#!/bin/bash -fe # E3SM Water Cycle v2 run_e3sm script template. # # Inspired by v1 run_e3sm script as well as SCREAM group simplified run script. # # Bash coding style inspired by: # http://kfirlavi.herokuapp.com/blog/2012/11/14/defensive-bash-programming # TO DO: # - custom pelayout main() { # For debugging, uncomment line below #set -x # --- Configuration flags ---- # Machine and project readonly MACHINE=anvil readonly PROJECT="condo" # Simulation readonly COMPSET="S" readonly RESOLUTION="f19_g16" # BEFORE RUNNING : CHANGE the following CASE_NAME to desired value readonly CASE_NAME="test_perf_archive" # If this is part of a simulation campaign, ask your group lead about using a case_group label # readonly CASE_GROUP="" # Code and compilation readonly CHECKOUT="20210806" readonly BRANCH="master" readonly CHERRY=( ) readonly DEBUG_COMPILE=false # Run options readonly MODEL_START_TYPE="hybrid" # 'initial', 'continue', 'branch', 'hybrid' readonly START_DATE="0001-01-01" # Additional options for 'branch' and 'hybrid' readonly GET_REFCASE=FALSE readonly RUN_REFDIR="/global/cscratch1/sd/forsyth/E3SMv2/v2.LR.piControl/init" readonly RUN_REFCASE="20210625.v2rc3c-GWD.piControl.ne30pg2_EC30to60E2r2.chrysalis" readonly RUN_REFDATE="1001-01-01" # same as MODEL_START_DATE for 'branch', can be different for 'hybrid' # Set paths readonly CODE_ROOT="/home/ac.boutte3/E3SM" readonly CASE_ROOT="/lcrc/group/e3sm/ac.boutte3/scratch/anvil/${CASE_NAME}" # Sub-directories readonly CASE_BUILD_DIR=${CASE_ROOT}/build readonly CASE_ARCHIVE_DIR=${CASE_ROOT}/archive # Define type of run # short tests: 'XS_2x5_ndays', 'XS_1x10_ndays', 'S_1x10_ndays', # 'M_1x10_ndays', 'M2_1x10_ndays', 'M80_1x10_ndays', 'L_1x10_ndays' # or 'production' for full simulation readonly run='XS_2x5_ndays' if [ "${run}" != "production" ]; then # Short test simulations tmp=($(echo $run | tr "_" " ")) layout=${tmp[0]} units=${tmp[2]} resubmit=$(( ${tmp[1]%%x*} -1 )) length=${tmp[1]##*x} readonly CASE_SCRIPTS_DIR=${CASE_ROOT}/tests/${run}/case_scripts readonly CASE_RUN_DIR=${CASE_ROOT}/tests/${run}/run readonly PELAYOUT=${layout} readonly WALLTIME="2:00:00" readonly STOP_OPTION=${units} readonly STOP_N=${length} readonly REST_OPTION=${STOP_OPTION} readonly REST_N=${STOP_N} readonly RESUBMIT=${resubmit} readonly DO_SHORT_TERM_ARCHIVING=false else # Production simulation readonly CASE_SCRIPTS_DIR=${CASE_ROOT}/case_scripts readonly CASE_RUN_DIR=${CASE_ROOT}/run readonly PELAYOUT="L" readonly WALLTIME="34:00:00" readonly STOP_OPTION="nyears" readonly STOP_N="50" readonly REST_OPTION="nyears" readonly REST_N="5" readonly RESUBMIT="9" readonly DO_SHORT_TERM_ARCHIVING=false fi # Coupler history readonly HIST_OPTION="nyears" readonly HIST_N="5" # Leave empty (unless you understand what it does) readonly OLD_EXECUTABLE="" # --- Toggle flags for what to do ---- do_fetch_code=false do_create_newcase=true do_case_setup=true do_case_build=true do_case_submit=true # --- Now, do the work --- # Make directories created by this script world-readable umask 022 # Fetch code from Github fetch_code # Create case create_newcase # Setup case_setup # Build case_build # Configure runtime options runtime_options # Copy script into case_script directory for provenance copy_script # Submit case_submit # All done echo $'\n----- All done -----\n' } # ======================= # Custom user_nl settings # ======================= user_nl() { cat << EOF >> user_nl_eam nhtfrq = 0,-24,-6,-6,-3,-24,0 mfilt = 1,30,120,120,240,30,1 avgflag_pertape = 'A','A','I','A','A','A','I' fexcl1 = 'CFAD_SR532_CAL', 'LINOZ_DO3', 'LINOZ_DO3_PSC', 'LINOZ_O3CLIM', 'LINOZ_O3COL', 'LINOZ_SSO3', 'hstobie_linoz' fincl1 = 'extinct_sw_inp','extinct_lw_bnd7','extinct_lw_inp','CLD_CAL', 'TREFMNAV', 'TREFMXAV' fincl2 = 'FLUT','PRECT','U200','V200','U850','V850','Z500','OMEGA500','UBOT','VBOT','TREFHT','TREFHTMN:M','TREFHTMX:X','QREFHT','TS','PS','TMQ','TUQ','TVQ','TOZ', 'FLDS', 'FLNS', 'FSDS', 'FSNS', 'SHFLX', 'LHFLX', 'TGCLDCWP', 'TGCLDIWP', 'TGCLDLWP', 'CLDTOT', 'T250', 'T200', 'T150', 'T100', 'T050', 'T025', 'T010', 'T005', 'T002', 'T001', 'TTOP', 'U250', 'U150', 'U100', 'U050', 'U025', 'U010', 'U005', 'U002', 'U001', 'UTOP', 'FSNT', 'FLNT' fincl3 = 'PSL','T200','T500','U850','V850','UBOT','VBOT','TREFHT', 'Z700', 'TBOT:M' fincl4 = 'FLUT','U200','U850','PRECT','OMEGA500' fincl5 = 'PRECT','PRECC','TUQ','TVQ','QFLX','SHFLX','U90M','V90M' fincl6 = 'CLDTOT_ISCCP','MEANCLDALB_ISCCP','MEANTAU_ISCCP','MEANPTOP_ISCCP','MEANTB_ISCCP','CLDTOT_CAL','CLDTOT_CAL_LIQ','CLDTOT_CAL_ICE','CLDTOT_CAL_UN','CLDHGH_CAL','CLDHGH_CAL_LIQ','CLDHGH_CAL_ICE','CLDHGH_CAL_UN','CLDMED_CAL','CLDMED_CAL_LIQ','CLDMED_CAL_ICE','CLDMED_CAL_UN','CLDLOW_CAL','CLDLOW_CAL_LIQ','CLDLOW_CAL_ICE','CLDLOW_CAL_UN' fincl7 = 'O3', 'PS', 'TROP_P' ! Additional retuning clubb_tk1 = 268.15D0 gw_convect_hcf = 10.0 EOF cat << EOF >> user_nl_elm hist_dov2xy = .true.,.true. hist_fincl2 = 'H2OSNO', 'FSNO', 'QRUNOFF', 'QSNOMELT', 'FSNO_EFF', 'SNORDSL', 'SNOW', 'FSDS', 'FSR', 'FLDS', 'FIRE', 'FIRA' hist_mfilt = 1,365 hist_nhtfrq = 0,-24 hist_avgflag_pertape = 'A','A' EOF cat << EOF >> user_nl_mosart rtmhist_fincl2 = 'RIVER_DISCHARGE_OVER_LAND_LIQ' rtmhist_mfilt = 1,365 rtmhist_ndens = 2 rtmhist_nhtfrq = 0,-24 EOF } patch_mpas_streams() { echo } ###################################################### ### Most users won't need to change anything below ### ###################################################### #----------------------------------------------------- fetch_code() { if [ "${do_fetch_code,,}" != "true" ]; then echo $'\n----- Skipping fetch_code -----\n' return fi echo $'\n----- Starting fetch_code -----\n' local path=${CODE_ROOT} local repo=e3sm echo "Cloning $repo repository branch $BRANCH under $path" if [ -d "${path}" ]; then echo "ERROR: Directory already exists. Not overwriting" exit 20 fi mkdir -p ${path} pushd ${path} # This will put repository, with all code git clone git@github.com:E3SM-Project/${repo}.git . # Setup git hooks rm -rf .git/hooks git clone git@github.com:E3SM-Project/E3SM-Hooks.git .git/hooks git config commit.template .git/hooks/commit.template # Check out desired branch git checkout ${BRANCH} # Custom addition if [ "${CHERRY}" != "" ]; then echo ----- WARNING: adding git cherry-pick ----- for commit in "${CHERRY[@]}" do echo ${commit} git cherry-pick ${commit} done echo ------------------------------------------- fi # Bring in all submodule components git submodule update --init --recursive popd } #----------------------------------------------------- create_newcase() { if [ "${do_create_newcase,,}" != "true" ]; then echo $'\n----- Skipping create_newcase -----\n' return fi echo $'\n----- Starting create_newcase -----\n' if [[ -z "$CASE_GROUP" ]]; then ${CODE_ROOT}/cime/scripts/create_newcase \ --case ${CASE_NAME} \ --output-root ${CASE_ROOT} \ --script-root ${CASE_SCRIPTS_DIR} \ --handle-preexisting-dirs u \ --compset ${COMPSET} \ --res ${RESOLUTION} \ --machine ${MACHINE} \ --walltime ${WALLTIME} \ --pecount ${PELAYOUT} else ${CODE_ROOT}/cime/scripts/create_newcase \ --case ${CASE_NAME} \ --case-group ${CASE_GROUP} \ --output-root ${CASE_ROOT} \ --script-root ${CASE_SCRIPTS_DIR} \ --handle-preexisting-dirs u \ --compset ${COMPSET} \ --res ${RESOLUTION} \ --machine ${MACHINE} \ --walltime ${WALLTIME} \ --pecount ${PELAYOUT} fi if [ $? != 0 ]; then echo $'\nNote: if create_newcase failed because sub-directory already exists:' echo $' * delete old case_script sub-directory' echo $' * or set do_newcase=false\n' exit 35 fi } #----------------------------------------------------- case_setup() { if [ "${do_case_setup,,}" != "true" ]; then echo $'\n----- Skipping case_setup -----\n' return fi echo $'\n----- Starting case_setup -----\n' pushd ${CASE_SCRIPTS_DIR} # Setup some CIME directories ./xmlchange EXEROOT=${CASE_BUILD_DIR} ./xmlchange RUNDIR=${CASE_RUN_DIR} # Short term archiving ./xmlchange DOUT_S=${DO_SHORT_TERM_ARCHIVING^^} ./xmlchange DOUT_S_ROOT=${CASE_ARCHIVE_DIR} # Build with COSP, except for a data atmosphere (datm) if [ `./xmlquery --value COMP_ATM` == "datm" ]; then echo $'\nThe specified configuration uses a data atmosphere, so cannot activate COSP simulator\n' else echo $'\nConfiguring E3SM to use the COSP simulator\n' # ./xmlchange --id CAM_CONFIG_OPTS --append --val='-cosp' fi # Extracts input_data_dir in case it is needed for user edits to the namelist later local input_data_dir=`./xmlquery DIN_LOC_ROOT --value` # Custom user_nl user_nl # Finally, run CIME case.setup ./case.setup --reset popd } #----------------------------------------------------- case_build() { pushd ${CASE_SCRIPTS_DIR} # do_case_build = false if [ "${do_case_build,,}" != "true" ]; then echo $'\n----- case_build -----\n' if [ "${OLD_EXECUTABLE}" == "" ]; then # Ues previously built executable, make sure it exists if [ -x ${CASE_BUILD_DIR}/e3sm.exe ]; then echo 'Skipping build because $do_case_build = '${do_case_build} else echo 'ERROR: $do_case_build = '${do_case_build}' but no executable exists for this case.' exit 297 fi else # If absolute pathname exists and is executable, reuse pre-exiting executable if [ -x ${OLD_EXECUTABLE} ]; then echo 'Using $OLD_EXECUTABLE = '${OLD_EXECUTABLE} cp -fp ${OLD_EXECUTABLE} ${CASE_BUILD_DIR}/ else echo 'ERROR: $OLD_EXECUTABLE = '$OLD_EXECUTABLE' does not exist or is not an executable file.' exit 297 fi fi echo 'WARNING: Setting BUILD_COMPLETE = TRUE. This is a little risky, but trusting the user.' ./xmlchange BUILD_COMPLETE=TRUE # do_case_build = true else echo $'\n----- Starting case_build -----\n' # Turn on debug compilation option if requested if [ "${DEBUG_COMPILE^^}" == "TRUE" ]; then ./xmlchange DEBUG=${DEBUG_COMPILE^^} fi # Run CIME case.build ./case.build # Some user_nl settings won't be updated to *_in files under the run directory # Call preview_namelists to make sure *_in and user_nl files are consistent. ./preview_namelists fi popd } #----------------------------------------------------- runtime_options() { echo $'\n----- Starting runtime_options -----\n' pushd ${CASE_SCRIPTS_DIR} # Set simulation start date ./xmlchange RUN_STARTDATE=${START_DATE} # Segment length ./xmlchange STOP_OPTION=${STOP_OPTION,,},STOP_N=${STOP_N} # Restart frequency ./xmlchange REST_OPTION=${REST_OPTION,,},REST_N=${REST_N} # Coupler history ./xmlchange HIST_OPTION=${HIST_OPTION,,},HIST_N=${HIST_N} # Coupler budgets (always on) ./xmlchange BUDGETS=TRUE # Set resubmissions if (( RESUBMIT > 0 )); then ./xmlchange RESUBMIT=${RESUBMIT} fi # Run type # Start from default of user-specified initial conditions if [ "${MODEL_START_TYPE,,}" == "initial" ]; then ./xmlchange RUN_TYPE="startup" ./xmlchange CONTINUE_RUN="FALSE" # Continue existing run elif [ "${MODEL_START_TYPE,,}" == "continue" ]; then ./xmlchange CONTINUE_RUN="TRUE" elif [ "${MODEL_START_TYPE,,}" == "branch" ] || [ "${MODEL_START_TYPE,,}" == "hybrid" ]; then ./xmlchange RUN_TYPE=${MODEL_START_TYPE,,} ./xmlchange GET_REFCASE=${GET_REFCASE} ./xmlchange RUN_REFDIR=${RUN_REFDIR} ./xmlchange RUN_REFCASE=${RUN_REFCASE} ./xmlchange RUN_REFDATE=${RUN_REFDATE} echo 'Warning: $MODEL_START_TYPE = '${MODEL_START_TYPE} echo '$RUN_REFDIR = '${RUN_REFDIR} echo '$RUN_REFCASE = '${RUN_REFCASE} echo '$RUN_REFDATE = '${START_DATE} else echo 'ERROR: $MODEL_START_TYPE = '${MODEL_START_TYPE}' is unrecognized. Exiting.' exit 380 fi # Patch mpas streams files patch_mpas_streams popd } #----------------------------------------------------- case_submit() { if [ "${do_case_submit,,}" != "true" ]; then echo $'\n----- Skipping case_submit -----\n' return fi echo $'\n----- Starting case_submit -----\n' pushd ${CASE_SCRIPTS_DIR} # Run CIME case.submit ./case.submit popd } #----------------------------------------------------- copy_script() { echo $'\n----- Saving run script for provenance -----\n' local script_provenance_dir=${CASE_SCRIPTS_DIR}/run_script_provenance mkdir -p ${script_provenance_dir} local this_script_name=`basename $0` local script_provenance_name=${this_script_name}.`date +%Y%m%d-%H%M%S` cp -vp ${this_script_name} ${script_provenance_dir}/${script_provenance_name} } #----------------------------------------------------- # Silent versions of popd and pushd pushd() { command pushd "$@" > /dev/null } popd() { command popd "$@" > /dev/null } # Now, actually run the script #----------------------------------------------------- main
- Query parameters
mexpid (int): experiment id value
Note
note
- /exp-details/<int:mexpid>
experiment details stats page
Example request:
$ curl https://pace.ornl.gov/exp-details/<int:mexpid>
Example response:
html page created for experiment details
- Query parameters
mexpid (int): experiment id value
Note
note
- /flamegraph/<expid>/<rank>/
static page which provide flamegraph of the model timing
Example request:
$ curl https://pace.ornl.gov/flamegraph/<expid>/<rank>/
Example response:
flamegraph.html template
- Query parameters
expid (int): experiment id valuerank (string): rank value of the experiment
Note
note
- /memoryprofile/<int:mexpid>
Get memory profile stats page
Example request:
$ curl https://pace.ornl.gov/memoryprofile/<int:mexpid>
Example response:
memoryProfilePage.html template
- Query parameters
mexpid (int): experiment id value
Note
note
- /nmlviewer/<int:mexpid>/<mname>
Get nml view stats page
Example request:
$ curl https://pace.ornl.gov/nmlviewer/<int:mexpid>/<mname>
Example response:
tabulator.html template
- Query parameters
mexpid (int): experiment id valuemname (string): namelist filename
Note
note
- /note/<int:expID>
Get a specific list of elements from e3smexp
Example request:
$ curl https://pace.ornl.gov/note/<int:expID>
Example response:
note.html template
- Query parameters
expID (int): experiment id value
Note
note
- /platforms/<platform>/
Get list of experiments for specific platforms
Example request:
$ curl https://pace.ornl.gov/platforms/<platform>/
Example response:
list of experiments for specific machine
- Query parameters
platform (string): name of the machine
Note
note
- /rcviewer/<int:mexpid>/<mname>
Get rc view stats page
Example request:
$ curl https://pace.ornl.gov/rcviewer/<int:mexpid>/<mname>
Example response:
{ "atm2ice_fmapname":"idmap", "atm2ice_fmaptype":"X", "atm2ice_smapname":"idmap", "atm2ice_smaptype":"X", "atm2ice_vmapname":"idmap", "atm2ice_vmaptype":"X", "atm2lnd_fmapname":"idmap", "atm2lnd_fmaptype":"X", "atm2lnd_smapname":"idmap", "atm2lnd_smaptype":"X", "atm2ocn_fmapname":"idmap", "atm2ocn_fmaptype":"X", "atm2ocn_smapname":"idmap", "atm2ocn_smaptype":"X", "atm2ocn_vmapname":"idmap", "atm2ocn_vmaptype":"X", "atm2rof_fmapname":"idmap", "atm2rof_fmaptype":"X", "atm2rof_smapname":"idmap", "atm2rof_smaptype":"X", "atm2wav_smapname":"idmap", "atm2wav_smaptype":"X", "glc2ice_fmapname":"idmap_ignore", "glc2ice_fmaptype":"X", "glc2ice_rmapname":"idmap_ignore", "glc2ice_rmaptype":"X", "glc2ice_smapname":"idmap_ignore", "glc2ice_smaptype":"X", "glc2lnd_fmapname":"idmap", "glc2lnd_fmaptype":"X", "glc2lnd_smapname":"idmap", "glc2lnd_smaptype":"X", "glc2ocn_fmapname":"idmap_ignore", "glc2ocn_fmaptype":"X", "glc2ocn_ice_rmapname":"idmap_ignore", "glc2ocn_ice_rmaptype":"X", "glc2ocn_liq_rmapname":"idmap_ignore", "glc2ocn_liq_rmaptype":"X", "glc2ocn_smapname":"idmap_ignore", "glc2ocn_smaptype":"X", "iac2atm_fmapname":"idmap", "iac2atm_fmaptype":"X", "iac2atm_smapname":"idmap", "iac2atm_smaptype":"X", "iac2lnd_fmapname":"idmap", "iac2lnd_fmaptype":"X", "iac2lnd_smapname":"idmap", "iac2lnd_smaptype":"X", "ice2atm_fmapname":"idmap", "ice2atm_fmaptype":"X", "ice2atm_smapname":"idmap", "ice2atm_smaptype":"X", "ice2wav_smapname":"idmap", "ice2wav_smaptype":"X", "lnd2atm_fmapname":"idmap", "lnd2atm_fmaptype":"X", "lnd2atm_smapname":"idmap", "lnd2atm_smaptype":"X", "lnd2glc_fmapname":"idmap", "lnd2glc_fmaptype":"X", "lnd2glc_smapname":"idmap", "lnd2glc_smaptype":"X", "lnd2rof_fmapname":"idmap", "lnd2rof_fmaptype":"X", "ocn2atm_fmapname":"idmap", "ocn2atm_fmaptype":"X", "ocn2atm_smapname":"idmap", "ocn2atm_smaptype":"X", "ocn2glc_fmapname":"idmap_ignore", "ocn2glc_fmaptype":"X", "ocn2glc_smapname":"idmap_ignore", "ocn2glc_smaptype":"X", "ocn2wav_smapname":"idmap", "ocn2wav_smaptype":"X", "rof2lnd_fmapname":"idmap", "rof2lnd_fmaptype":"X", "rof2ocn_fmapname":"idmap_ignore", "rof2ocn_fmaptype":"X", "rof2ocn_ice_rmapname":"idmap", "rof2ocn_ice_rmaptype":"X", "rof2ocn_liq_rmapname":"idmap", "rof2ocn_liq_rmaptype":"X", "wav2ocn_smapname":"idmap", "wav2ocn_smaptype":"X" }
- Query parameters
mexpid (int): experiment id valuemname (string): RC filename
Note
note
- /replaysh/<int:mexpid>
Get replay sh script page
Example request:
$ curl https://pace.ornl.gov/replaysh/<int:mexpid>
Example response:
#!/bin/bash set -e # Created 2022-06-08 14:53:39 CASEDIR="/global/cscratch1/sd/petercal/e3sm_scratch/cori-knl/F2010-SCREAMv1.ne4_ne4.16x1.test1" /global/homes/p/petercal/gitwork/scream//cime/scripts/create_newcase --case F2010-SCREAMv1.ne4_ne4.16x1.test1 --compset F2010-SCREAMv1 --res ne4_ne4 --pecount 16x1 --compiler intel --walltime 00:30 --queue debug cd "${CASEDIR}" ./case.setup ./case.build ./case.submit
- Query parameters
mexpid (int): experiment id value
Note
note
- /scorpio/<int:mexpid>/<name>
Get scorpio stats page
Example request:
$ curl https://pace.ornl.gov/scorpio/<int:mexpid>/<name>
Example response:
scorpioIOpage.html
- Query parameters
mexpid (int): experiment id valuename (string): scorpio filename
Note
note
- /search/<searchQuery>
The search page! This is the primary navigation page for the site. It changes depending on where the user is on the site.
Example request:
$ curl https://pace.ornl.gov/search/<searchQuery>
Example response:
home page navigation for PACE
- Query parameters
searchQuery (string): search query strings
Note
note
- /summaryQuery/<int:expID>/<rank>/
Rest api to retrives a model-timing tree in json from the database
Example request:
$ curl https://pace.ornl.gov/summaryQuery/<int:expID>/<rank>/
Example response:
{ "obj":[ [ { "name":"CPL:INIT", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":156.351669, "max":156.351669, "min":156.351669, "utrOverhead":0.0 }, "children":[ { "name":"CPL:cime_pre_init1", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":9.745003, "max":9.745003, "min":9.745003, "utrOverhead":0.0 }, "children":[ { "name":"CPL:mpi_init", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":8.397, "max":8.397, "min":8.397, "utrOverhead":0.0 }, "children":[ ] } ] }, { "name":"CPL:ESMF_Initialize", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":0.0, "max":0.0, "min":0.0, "utrOverhead":0.0 }, "children":[ ] }, { "name":"CPL:cime_pre_init2", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":0.510199, "max":0.510199, "min":0.510199, "utrOverhead":0.0 }, "children":[ { "name":"CPL:seq_infodata_init", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":0.269712, "max":0.269712, "min":0.269712, "utrOverhead":0.0 }, "children":[ { "name":"PIO:get_var_1d_double", "multiParent":true, "values":{ "on":false, "called":4.0, "recurse":false, "wallClock":0.002535, "max":0.000879, "min":6.6e-05, "utrOverhead":0.0 }, "children":[ ] }, { "name":"PIO:get_var_0d_text", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":9.8e-05, "max":9.8e-05, "min":9.8e-05, "utrOverhead":0.0 }, "children":[ ] } ] }, { "name":"CPL:seq_timemgr_clockInit", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":0.104025, "max":0.104025, "min":0.104025, "utrOverhead":0.0 }, "children":[ { "name":"PIO:get_var_1d_int", "multiParent":true, "values":{ "on":false, "called":7.0, "recurse":false, "wallClock":0.006969, "max":0.00583, "min":5.5e-05, "utrOverhead":1e-06 }, "children":[ { "name":"PIO:PIOc_get_vars_tc", "multiParent":true, "values":{ "on":false, "called":12.0, "recurse":false, "wallClock":0.003488, "max":0.000827, "min":3.7e-05, "utrOverhead":1e-06 }, "children":[ ] } ] } ] } ] }, { "name":"CPL:cime_init", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":146.096466, "max":146.096466, "min":146.096466, "utrOverhead":0.0 }, "children":[ { "name":"CPL:init_comps", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":143.496506, "max":143.496506, "min":143.496506, "utrOverhead":0.0 }, "children":[ { "name":"CPL:comp_init_pre_all", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":1.7e-05, "max":1.7e-05, "min":1.7e-05, "utrOverhead":0.0 }, "children":[ ] }, { "name":"CPL:comp_init_cc_atm", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":59.907314, "max":59.907314, "min":59.907314, "utrOverhead":0.0 }, "children":[ { "name":"a_i:comp_init", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":59.907154, "max":59.907154, "min":59.907154, "utrOverhead":0.0 }, "children":[ { "name":"a_i:datm_readnml", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":0.50923, "max":0.50923, "min":0.50923, "utrOverhead":0.0 }, "children":[ ] }, { "name":"a_i:DATM_INIT", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":59.396839, "max":59.396839, "min":59.396839, "utrOverhead":0.0 }, "children":[ { "name":"a_i:datm_strdata_init", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":58.257004, "max":58.257004, "min":58.257004, "utrOverhead":0.0 }, "children":[ { "name":"a_i:PIO:initdecomp_dof", "multiParent":false, "values":{ "on":false, "called":15.0, "recurse":false, "wallClock":0.043377, "max":0.01535, "min":0.001661, "utrOverhead":1e-06 }, "children":[ { "name":"a_i:PIO:PIOc_initdecomp", "multiParent":false, "values":{ "on":false, "called":15.0, "recurse":false, "wallClock":0.043347, "max":0.015344, "min":0.00166, "utrOverhead":1e-06 }, "children":[ { "name":"a_i:PIO:box_rearrange_create", "multiParent":false, "values":{ "on":false, "called":15.0, "recurse":false, "wallClock":0.040081, "max":0.014411, "min":0.001649, "utrOverhead":1e-06 }, "children":[ { "name":"a_i:PIO:pio_swapm", "multiParent":true, "values":{ "on":false, "called":87.0, "recurse":false, "wallClock":0.036115, "max":0.011435, "min":3.9e-05, "utrOverhead":7e-06 }, "children":[ ] } ] } ] } ] } ] }, { "name":"a_i:datm_initgsmaps", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":0.000241, "max":0.000241, "min":0.000241, "utrOverhead":0.0 }, "children":[ ] }, { "name":"a_i:datm_initmctdom", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":0.000259, "max":0.000259, "min":0.000259, "utrOverhead":0.0 }, "children":[ ] }, { "name":"a_i:datm_initmctavs", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":0.000674, "max":0.000674, "min":0.000674, "utrOverhead":0.0 }, "children":[ ] }, { "name":"a_i:DATM_RUN", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":1.104809, "max":1.104809, "min":1.104809, "utrOverhead":0.0 }, "children":[ { "name":"a_i:datm_run1", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":7e-06, "max":7e-06, "min":7e-06, "utrOverhead":0.0 }, "children":[ ] }, { "name":"a_i:datm", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":1.104663, "max":1.104663, "min":1.104663, "utrOverhead":0.0 }, "children":[ { "name":"a_i:datm_strdata_advance", "multiParent":false, "values":{ "on":false, "called":1.0, "recurse":false, "wallClock":1.101394, "max":1.101394, "min":1.101394, "utrOverhead":0.0 }, "children":[ { "name":"a_i:datm_strd_adv_total", 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] }, { "name":"l:cnpinit", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":0.028849, "max":2.8e-05, "min":1e-06, "utrOverhead":0.002877 }, "children":[ { "name":"l:cnpvegsumm", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":0.003854, "max":1e-06, "min":0.0, "utrOverhead":0.002877 }, "children":[ ] } ] }, { "name":"l:begwbal", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":1.080217, "max":0.00011, "min":2.8e-05, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:begcnpbal", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":0.003979, "max":1e-06, "min":0.0, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:drvinit", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":4.676682, "max":0.00024, "min":7.8e-05, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:canhydro", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":10.612647, "max":0.000446, "min":0.000208, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:surfrad", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":22.636253, "max":0.000907, "min":0.00025, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:bgp1", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":9.324726, "max":0.000373, "min":0.000169, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:bgflux", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":26.939186, "max":0.001145, "min":0.000433, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:canflux", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":424.158722, "max":0.023453, "min":0.005931, "utrOverhead":0.002877 }, "children":[ { "name":"l:can_iter", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":364.454529, "max":0.021695, "min":0.004532, "utrOverhead":0.002877 }, "children":[ ] } ] }, { "name":"l:uflux", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":8.646675, "max":0.000879, "min":0.000143, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:bgplake", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":54.24786, "max":0.002456, "min":0.000985, "utrOverhead":0.002877 }, "children":[ { "name":"l:bgc", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":33.709774, "max":0.001596, "min":0.000641, "utrOverhead":0.002877 }, "children":[ ] } ] }, { "name":"l:soiltemperature", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":117.924889, "max":0.00437, "min":0.001701, "utrOverhead":0.002877 }, "children":[ { "name":"l:SoilThermProp", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":19.871801, "max":0.001259, "min":0.000299, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:SoilTempBandDiag", "multiParent":false, "values":{ "on":false, "called":70080.0, "recurse":false, "wallClock":23.190128, "max":0.001324, "min":7.5e-05, "utrOverhead":0.005754 }, "children":[ ] }, { "name":"l:PhaseChangeH2osfc", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":0.100251, "max":0.000113, "min":1e-06, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:PhaseChangebeta", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":7.723561, "max":0.000851, "min":8.8e-05, "utrOverhead":0.002877 }, "children":[ ] } ] }, { "name":"l:bgp2", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":13.250068, "max":0.001238, "min":0.000172, "utrOverhead":0.002877 }, "children":[ { "name":"l:bgp2_loop_1", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":1.939811, "max":0.000275, "min":2.4e-05, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:bgp2_loop_2", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":3.337143, "max":0.00048, "min":3.4e-05, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:bgp2_loop_3", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":6.308725, "max":0.000741, "min":8.9e-05, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:bgp2_loop_4", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":1.295328, "max":0.000221, "min":1.9e-05, "utrOverhead":0.002877 }, "children":[ ] } ] }, { "name":"l:patch2col", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":6.99819, "max":0.00079, "min":0.000116, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:hydro without drainage", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":66.278023, "max":0.002847, "min":0.001177, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:hylake", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":5.080859, "max":0.000781, "min":6.9e-05, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:snow_init", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":2.462377, "max":0.00036, "min":3.5e-05, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:ecosysdyn", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":1.911502, "max":0.000316, "min":2.3e-05, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:depvel", "multiParent":false, "values":{ "on":false, "called":70080.0, "recurse":false, "wallClock":0.042217, "max":3e-05, "min":0.0, "utrOverhead":0.005754 }, "children":[ ] }, { "name":"l:hydro2 drainage", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":5.379766, "max":0.000751, "min":9e-05, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:balchk", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":4.440455, "max":0.000654, "min":8.1e-05, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:gridbalchk", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":4.228576, "max":0.000743, "min":7.5e-05, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:surfalb", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":47.534462, "max":0.003185, "min":0.000553, "utrOverhead":0.002877 }, "children":[ ] }, { "name":"l:urbsurfalb", "multiParent":false, "values":{ "on":false, "called":35040.0, "recurse":false, "wallClock":11.193721, "max":0.001022, "min":0.000176, "utrOverhead":0.002877 }, "children":[ ] } ] ], "meta":{ "expid":"114392", "rank":"0", "compset":"ICRUELM", "res":"r0125_r0125_oRRS18to6v3" } }
- Query parameters
expID (int): experiment id valuerank (int): rank of the experiment
Note
note
- /svg/runtime/<int:expid>
Get a specific list of elements from e3smexp
Example request:
$ curl https://pace.ornl.gov/svg/runtime/<int:expid>
Example response:
image of runtime
- Query parameters
expid (int): experiment id value
Note
note
- /xmlviewer/<int:mexpid>/<mname>
Get xml view stats page
Example request:
$ curl https://pace.ornl.gov/xmlviewer/<int:mexpid>/<mname>
Example response:
{ "file":{ "@id":"env_archive.xml", "@version":"2.0", "header":"These are the variables specific to the short term archiver.\n See ./case.st_archive --help for details on running the short term archiver script.\n To validate the env_archive.xml file using xmllint, run\n xmllint -schema $SRCROOT/cime/config/xml_schemas/env_archive.xsd env_archive.xml\n from the case root.\n The patterns below are Python regular expressions.\n The file names created from these patterns will add an optional digit\n to them and will enclose them in a pair of '.'.\n Some useful Python metacharacters are:\n [] = any single character inside the brackets\n \\d = a digit = [0123456789] = [0-9]\n ? = 0 or 1 of the previous character\n * = 0 or more of the previous character (greedy!)\n + = 1 or more of the previous character (greedy!)\n \\. = a period\n . = any non-newline character\n Use them carefully. They're often confused with shell-type\n wild card characters.", "components":{ "@version":"2.0", "comp_archive_spec":[ { "@compclass":"atm", "@compname":"cam", "rest_file_extension":[ "[ri]", "rh\\d*", "rs" ], "hist_file_extension":[ "h\\d*.*\\.nc$", "e" ], "rest_history_varname":"nhfil", "rpointer":{ "rpointer_file":"rpointer.atm$NINST_STRING", "rpointer_content":"$CASE.cam$NINST_STRING.r.$DATENAME.nc" }, "test_file_names":{ "tfile":[ { "@disposition":"copy", "#text":"rpointer.atm" }, { "@disposition":"copy", "#text":"rpointer.atm_9999" }, { "@disposition":"copy", "#text":"casename.cam.r.1976-01-01-00000.nc" }, { "@disposition":"copy", "#text":"casename.cam.rh4.1976-01-01-00000.nc" }, { "@disposition":"move", "#text":"casename.cam.h0.1976-01-01-00000.nc" }, { "@disposition":"ignore", "#text":"casename.cam.h0.1976-01-01-00000.nc.base" }, { "@disposition":"move", "#text":"casename.cam_0002.e.postassim.1976-01-01-00000.nc" }, { "@disposition":"move", "#text":"casename.cam_0002.e.preassim.1976-01-01-00000.nc" }, { "@disposition":"copy", "#text":"casename.cam.i.1976-01-01-00000.nc" }, { "@disposition":"ignore", "#text":"anothercasename.cam.i.1976-01-01-00000.nc" } ] } }, { "@compclass":"lnd", "@compname":"clm", "rest_file_extension":[ "r", "rh\\d?" ], "hist_file_extension":[ "h\\d*.*\\.nc$", "e" ], "rest_history_varname":"locfnh", "rpointer":{ "rpointer_file":"rpointer.lnd$NINST_STRING", "rpointer_content":"./$CASE.clm2$NINST_STRING.r.$DATENAME.nc" }, "test_file_names":{ "tfile":[ { "@disposition":"copy", "#text":"rpointer.lnd" }, { "@disposition":"copy", "#text":"rpointer.lnd_9999" }, { "@disposition":"copy", "#text":"casename.clm2.r.1976-01-01-00000.nc" }, { "@disposition":"copy", "#text":"casename.clm2.rh4.1976-01-01-00000.nc" }, { "@disposition":"move", "#text":"casename.clm2.h0.1976-01-01-00000.nc" }, { "@disposition":"ignore", "#text":"casename.clm2.h0.1976-01-01-00000.nc.base" }, { "@disposition":"move", "#text":"casename.clm2_0002.e.postassim.1976-01-01-00000.nc" }, { "@disposition":"move", "#text":"casename.clm2_0002.e.preassim.1976-01-01-00000.nc" }, { "@disposition":"ignore", "#text":"anothercasename.clm2.i.1976-01-01-00000.nc" } ] } }, { "@compclass":"ice", "@compname":"cice", "rest_file_extension":"[ri]", "hist_file_extension":"h\\d*", "rest_history_varname":"unset", "rpointer":{ "rpointer_file":"rpointer.ice$NINST_STRING", "rpointer_content":"./$CASE.cice$NINST_STRING.r.$DATENAME.nc" }, "test_file_names":{ "tfile":[ { "@disposition":"copy", "#text":"rpointer.ice" }, { "@disposition":"copy", "#text":"casename.cice.r.1976-01-01-00000.nc" }, { "@disposition":"move", "#text":"casename.cice.h.1976-01-01-00000.nc" } ] } }, { "@compclass":"ocn", "@compname":"docn", "rest_file_extension":"rs*\\d*", "rest_history_varname":"unset", "rpointer":{ "rpointer_file":"rpointer.ocn$NINST_STRING", "rpointer_content":"$CASE.docn$NINST_STRING.r.$DATENAME.nc,$CASE.docn$NINST_STRING.rs1.$DATENAME.bin" } }, { "@compclass":"cpl", "@compname":"drv", "rest_file_extension":"r", "hist_file_extension":"hi?\\d*.*\\.nc$", "rest_history_varname":"unset", "rpointer":{ "rpointer_file":"rpointer$NINST_STRING.drv", "rpointer_content":"$CASE.cpl$NINST_STRING.r.$DATENAME.nc" }, "test_file_names":{ "tfile":[ { "@disposition":"move", "#text":"cpl_0001.log.5548574.chadmin1.180228-124723.gz" }, { "@disposition":"copy", "#text":"casename.cpl.r.1976-01-01-00000.nc" }, { "@disposition":"copy", "#text":"rpointer.drv_0001" }, { "@disposition":"copy", "#text":"rpointer.drv" }, { "@disposition":"ignore", "#text":"casenamenot.cpl.r.1976-01-01-00000.nc" } ] } } ] } } }
- Query parameters
mexpid (int): experiment id valuemname (string): XML filename
Note
note
Projects
E3SM
Parser
Build Time
This parses file build_times.txt.
Example request:
import parseBuildTime data, total_compute_cost, total_elasped_time = parseBuildTime.loaddb_buildTimesFile(filename)Note
data consist of long string total_compute_cost, total_elasped_time are floating numbers
Timing
This parses file e3sm_timing.* file.
Example request:
import parseE3SMTiming successFlag, timingProfileInfo, componentTable, runTimeTable = parseE3SMTiming.parseE3SMtiming(filename)Note
successFlag is bolean timingProfileInfo is json object componentTable, runTimeTable are list
Memory Profile
This parses file memory.* .
Example request:
import parseMemoryProfile data = parseMemoryProfile.loaddb_memfile(filename)Note
data is long string
Model Version
This parses file GIT_DESCRIBE.* .
Example request:
import parseModelVersion data = parseModelVersion.parseModelVersion(filename)Note
data is string
Namelist
This parses file namelist files in casedocs.
Example request:
import parseNameList data = parseNameList.loaddb_namelist(file)Example response:
{ "modelio":{ "diri":"/compyfs/kezi456/E3SM_simulations/v2.master.mam5.PD/build/atm", "diro":"/compyfs/kezi456/E3SM_simulations/v2.master.mam5.PD/tests/S_1x5_ndays/run", "logfile":"atm.log.303313.220628-152730" }, "pio_inparm":{ "pio_netcdf_format":"64bit_offset", "pio_numiotasks":-99, "pio_rearranger":1, "pio_root":0, "pio_stride":40, "pio_typename":"pnetcdf" } }Note
data is json object
Preview Run
This parses file preview_run.log.* .
Example request:
import parsePreviewRun data = parsePreviewRun.load_previewRunFile(file)Example response:
{ "nodes":10, "total_tasks":400, "tasks_per_node":40, "thread_count":1, "ngpus_per_node":0, "env":{ "I_MPI_ADJUST_ALLREDUCE":"1", "LD_LIBRARY_PATH":"/share/apps/gcc/8.1.0/lib:/share/apps/gcc/8.1.0/lib64:/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/tbb/lib/intel64_lin/gcc4.7:/share/apps/pnetcdf/1.9.0/intel/19.0.5/intelmpi/2019u4/lib:/share/apps/netcdf/4.6.3/intel/19.0.5/lib:/share/apps/hdf5/1.10.5/serial/lib:/share/apps/intel/2019u4/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/share/apps/intel/2019u4/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/share/apps/intel/2019u4/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel64_lin:/share/apps/intel/2019u5/comepilers_and_libraries_2019.5.281/linux/mpi/intel64/libfabric/lib:/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/mpi/intel64/lib/release:/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/mpi/intel64/lib:/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/ipp/lib/intel64:/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel64_lin:/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/mkl/lib/intel64_lin:/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/tbb/lib/intel64/gcc4.7:/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/tbb/lib/intel64/gcc4.7:/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/daal/lib/intel64_lin:/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/daal/../tbb/lib/intel64_lin/gcc4.4", "MKL_PATH":"/share/apps/intel/2019u5/compilers_and_libraries_2019.5.281/linux/mkl", "NETCDF_HOME":"/share/apps/netcdf/4.6.3/intel/19.0.5/", "OMP_NUM_THREADS":"1" }, "submit_cmd":"sbatch --time 00:20:00 -p short --account e3sm .case.run --resubmit", "mpirun":"srun --mpi=pmi2 --ntasks=400 --nodes=10 --kill-on-bad-exit -l --cpu_bind=cores -c 1 -m plane=40 /compyfs/kezi456/E3SM_simulations/v2.master.mam5.PD/build/e3sm.exe >> e3sm.log.$LID 2>&1", "omp_threads":"1" }Note
data is json object
RC File
This parses file seq_maps.rc.* .
Example request:
import parseRC data = parseRC.loaddb_rcfile(file)Example response:
{ "atm2ice_fmapname":"/lcrc/group/e3sm/data/inputdata/cpl/gridmaps/ne30pg2/map_ne30pg2_to_EC30to60E2r2_mono.201005.nc", "atm2ice_fmaptype":"X", "atm2ice_smapname":"/lcrc/group/e3sm/data/inputdata/cpl/gridmaps/ne30pg2/map_ne30pg2_to_EC30to60E2r2_bilin.201005.nc", "atm2ice_smaptype":"X", "atm2ice_vmapname":"/lcrc/group/e3sm/data/inputdata/cpl/gridmaps/ne30pg2/map_ne30pg2_to_EC30to60E2r2_bilin.201005.nc", "atm2ice_vmaptype":"X", "atm2lnd_fmapname":"idmap", "atm2lnd_fmaptype":"X", "atm2lnd_smapname":"idmap", "atm2lnd_smaptype":"X", "atm2ocn_fmapname":"/lcrc/group/e3sm/data/inputdata/cpl/gridmaps/ne30pg2/map_ne30pg2_to_EC30to60E2r2_mono.201005.nc", "atm2ocn_fmaptype":"X" }Note
data is json object
README File
This parses file README.case.* .
Example request:
import parseReadMe data = parseReadMe.parseReadme(file)Example response:
{ "name":"create_newcase", "date":"2021-06-07 10:17:07", "case":"/global/cscratch1/sd/blazg/e3sm_scratch/e3sm_v1.2_ne30_noAgg-60", "mach":"cori-knl", "res":"ne30_ne30", "compset":"F2010", "compiler":"intel" }Note
data is a json object
Replay sh
This parses file replay.sh.* .
Example request:
import parseReplaysh data = parseReplaysh.load_replayshFile(file)Note
data is a text blob
Run e3sm sh
This parses file run_e3sm.sh.* .
Example request:
import parseRunE3SMsh data = parseRunE3SMsh.load_rune3smshfile(file)Note
data is text blob
Scorpio
This parses file scorpio_stats.* .
Example request:
import parseScorpioStats run_time = 5 #(actual experiment run_time) data = parseScorpioStats.loaddb_scorpio_stats(file,run_time)Example response:
[ { "data":"...text...", "name":"EAM-410856", "iopercent":65.15, "iotime":231.45, "version":"1.0.0" } ]Note
data is a list of json.
XML File
This parses XML files in casedocs.
Example request:
import parseXML data = parseXML.loaddb_xmlfile(file)Example response:
{ "file":{ "@id":"env_batch.xml", "@version":"2.0", "header":"These variables may be changed anytime during a run, they\n control arguments to the batch submit command.", "group":[ { "@id":"config_batch", "entry":{ "@id":"BATCH_SYSTEM", "@value":"slurm", "type":"char", "valid_values":"nersc_slurm,lc_slurm,moab,pbs,lsf,slurm,cobalt,cobalt_theta,none", "desc":"The batch system type to use for this machine." } }, { "@id":"job_submission", "entry":{ "@id":"PROJECT_REQUIRED", "@value":"FALSE", "type":"logical", "valid_values":"TRUE,FALSE", "desc":"whether the PROJECT value is required on this machine" } } ], "batch_system":[ { "@type":"slurm", "batch_query":{ "@per_job_arg":"-j", "#text":"squeue" }, "batch_submit":"sbatch", "batch_cancel":"scancel", "batch_directive":"#SBATCH", "jobid_pattern":"(\\d+)$", "depend_string":"--dependency=afterok:jobid", "depend_allow_string":"--dependency=afterany:jobid", "depend_separator":":", "walltime_format":"%H:%M:%S", "batch_mail_flag":"--mail-user", "batch_mail_type_flag":"--mail-type", "batch_mail_type":"none, all, begin, end, fail", "submit_args":{ "arg":[ { "@flag":"--time", "@name":"$JOB_WALLCLOCK_TIME" }, { "@flag":"-p", "@name":"$JOB_QUEUE" }, { "@flag":"--account", "@name":"$PROJECT" } ] }, "directives":{ "directive":[ "--job-name={{ job_id }}", "--nodes={{ num_nodes }}", "--output={{ job_id }}.%j", "--exclusive" ] } }, { "@MACH":"chrysalis", "@type":"slurm", "directives":{ "directive":"--switches=$SHELL{echo \"(`./xmlquery --value NUM_NODES` + 19) / 20\" |bc}" }, "queues":{ "queue":[ { "@walltimemax":"48:00:00", "@strict":"true", "@nodemin":"1", "@nodemax":"492", "#text":"compute" }, { "@walltimemax":"04:00:00", "@strict":"true", "@nodemin":"1", "@nodemax":"20", "@default":"true", "#text":"debug" } ] } } ] } }Note
data is json object
Unit Test Parser
To perform unit test for e3sm parsers, use e3smParserTest.py script available under pace/e3sm/unit_test
Example request:
$ python3 e3smParserTest.pyExample response:
............ ---------------------------------------------------------------------- Ran 12 tests in 0.017s OKNote
Test case are pre-defined
Team
Development Team
Sarat Sreepathi, Oak Ridge National Laboratory
Gaurab KC, Oak Ridge National Laboratory
In collaboration with:
Youngsung Kim, Oak Ridge National Laboratory
Past Students:
Zachary Mitchell, Pellissippi State Community College
Acknowledgements
Special thanks to Patrick H. Worley for incorporating the timing infrastructure and performance archiving capabilities in E3SM which paved the way for PACE.
This research was supported as part of the E3SM project, funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research. The students’ work was partially supported by an appointment to the Science Education and Workforce Development Programs at Oak Ridge National Laboratory, administered by ORISE through the U.S. Department of Energy Oak Ridge Institute for Science and Education. This research used resources of the Compute and Data Environment for Science (CADES) at the Oak Ridge National Laboratory, which is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC05-00OR22725.
Thanks to Aaron Donahue and Peter Caldwell for sharing their process layout and atmosphere sub-component timing scripts.